Information for 11-TTKCYATGAC (Motif 23)

A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C
Reverse Opposite:
C A T G A G C T G T A C G T C A A G C T C T A G C T A G G T C A C G T A T G C A
p-value:1e-7
log p-value:-1.666e+01
Information Content per bp:1.671
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif517.4
Percentage of Background Sequences with motif1.08%
Average Position of motif in Targets43.7 +/- 28.4bp
Average Position of motif in Background51.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTKCYATGAC--
GGTTGCCATGGCAA
 A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTKCYATGAC--
NGTTGCCATGGCAA
 A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.72
Offset:4
Orientation:forward strand
Alignment:TTKCYATGAC
----CATGAC
 A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C
A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTKCYATGAC---
GTTGCCATGGNAAC
 A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX2/MA0600.2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTKCYATGAC----
CGTTGCCATGGCAACG
 A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTKCYATGAC----
GTTGCCATGGCAACM
 A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TTKCYATGAC---
CGGTTGCCATGGCAAC
 A C G T A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTKCYATGAC-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

RFX3/MA0798.1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTKCYATGAC----
CGTTGCCATGGCAACG
 A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C A C G T A C G T A C G T A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTKCYATGAC
ATTTTCCATT--
 A C G T A C G T A C G T C G A T C A G T G A T C G A T C T C G A A C G T A C T G T C G A G T A C
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T