Information for 6-SKGGRMRGTGKSTGCR (Motif 7)

A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
Reverse Opposite:
G A C T A C T G A G T C C G T A A T C G T G C A A G T C C G T A A G T C A G C T A C G T A G T C A G T C A G T C G T C A A T C G
p-value:1e-10
log p-value:-2.424e+01
Information Content per bp:1.808
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 17.0bp
Average Position of motif in Background76.9 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:SKGGRMRGTGKSTGCR---
---NNGCGTGTGTGCNGCN
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:SKGGRMRGTGKSTGCR
---GGGGGTGTGTCC-
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
A C G T A C G T A C G T T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:SKGGRMRGTGKSTGCR
-------TWGTCTGV-
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:SKGGRMRGTGKSTGCR-
-GCGGAGGTGTCGCCTC
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A A C G T
A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:SKGGRMRGTGKSTGCR
-----VBSYGTCTGG-
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-SKGGRMRGTGKSTGCR
AGGGGGCGGGGCTG---
 A C G T A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T A C G T

KLF16/MA0741.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:SKGGRMRGTGKSTGCR
-GGGGGCGTGGC----
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
A C G T C T A G C A T G C T A G A T C G A C T G G A T C C A T G A C G T C A T G C A T G A G T C A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:SKGGRMRGTGKSTGCR---
---NNNNTTGTGTGCTTNN
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:SKGGRMRGTGKSTGCR
-------CTGTCTGG-
 A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-SKGGRMRGTGKSTGCR
RGKGGGCGGAGC-----
 A C G T A T G C A C G T A C T G A C T G C T A G G T C A C T G A A C T G C G A T A C T G A C G T A T G C A C G T A C T G A G T C C T G A
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T