Information for 3-GTGCCAGCCNSCAGGT (Motif 3)

A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
Reverse Opposite:
C T G A A T G C A G T C A C G T C T A G A T C G C T A G A C T G A C T G T A G C A G C T A C T G C T A G T A G C G T C A A G T C
p-value:1e-12
log p-value:-2.972e+01
Information Content per bp:1.738
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.4 +/- 18.6bp
Average Position of motif in Background51.7 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTGCCAGCCNSCAGGT
ACTATGCCAACCTACC---
 A C G T A C G T A C G T A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTGCCAGCCNSCAGGT
ATGCCAACC-------
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL011.1_XCPE1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTGCCAGCCNSCAGGT
GGTCCCGCCC-------
 A C G T A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
A C T G A T C G A C G T A G T C A G T C A G T C C T A G A G T C A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTGCCAGCCNSCAGGT
-TTCCCGCCWG-----
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T A C G T A C G T A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GTGCCAGCCNSCAGGT
-GCCCCGCCCCC----
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
A C G T A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GTGCCAGCCNSCAGGT
ATGCCCACC-------
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GTGCCAGCCNSCAGGT-
-----TGCCCCCGGGCA
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTGCCAGCCNSCAGGT
GCCMCGCCCMCY----
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
T A C G A G T C G A T C T G A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C G A T C A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.53
Offset:10
Orientation:forward strand
Alignment:GTGCCAGCCNSCAGGT----
----------VCAGGTRDRY
 A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

PB0156.1_Plagl1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GTGCCAGCCNSCAGGT
NNNNGGTACCCCCCANN----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T C G A G T C A G T C T C G A A T C G A G T C A G T C A G T C A T G C G A T C G T C A A C T G A T C G A G C T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C A C G T A C G T A C G T A C G T