Information for 11-CCTCCATWTT (Motif 22)

A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T
Reverse Opposite:
C G T A T G C A G C T A G C T A G A C T C T A G A C T G C G T A T A C G T C A G
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.713
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif7.58%
Number of Background Sequences with motif1250.5
Percentage of Background Sequences with motif2.61%
Average Position of motif in Targets42.7 +/- 24.9bp
Average Position of motif in Background49.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CCTCCATWTT-
GCNGCCATCTTG
 A C G T A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCTCCATWTT-
GCCGCCATCTTG
 A C G T A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCTCCATWTT
GTCCGCCATTA-
 A C G T A C G T A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

SPIC/MA0687.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCATWTT--
TACTTCCTCTTTTN
 A C G T A C G T A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T A C G T
C A G T C G T A A G T C A C G T C G A T G T A C T A G C A C G T A T G C C G A T C A G T C A G T G A C T C A G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCTCCATWTT-
---CCTTTGTT
 A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCTCCATWTT---
---CCATTGTTYB
 A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCATWTT--
NNGCACCTTTCTCC
 A C G T A C G T A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCCATWTT-
-AACCTTATAT
 A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T
A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCTCCATWTT--
--NCCATTGTTC
 A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTCCATWTT
-ATCCAC---
 A G T C A T G C C G A T G T A C G A T C C T G A C G A T C G A T A C G T A C G T
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T