Information for 9-CCCAGGTTTTATT (Motif 15)

A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A A C G T C G T A C G T A C G T A C G T A A G T C A G T C C G A T A C T G A T C G C T A G
p-value:1e-8
log p-value:-2.035e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.8 +/- 7.0bp
Average Position of motif in Background45.2 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CCCAGGTTTTATT--
-----NTTTTATTGG
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCCAGGTTTTATT-----
--NNANTTTTATTGGNNN
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCCAGGTTTTATT--
-----NTTTTATTGG
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCCAGGTTTTATT--
-----TTTTTATTGG
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:CCCAGGTTTTATT---
------TTTTATTRGN
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CCCAGGTTTTATT--
-----NTTTTATGAC
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:CCCAGGTTTTATT--
------TTTTATTGC
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCCAGGTTTTATT---
-----NTTTTATTACN
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCCAGGTTTTATT-----
--NNAATTTTATTGGNTN
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:CCCAGGTTTTATT----
------TTTTATGGCTN
 A G T C A T G C A G T C C G T A A C T G A C T G A C G T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T