Information for 6-GCCAGTTTAAACA (Motif 5)

A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A
Reverse Opposite:
A C G T T C A G C A G T A C G T A C G T C G T A C G T A G T C A G T A C C G A T A C T G A T C G T A G C
p-value:1e-10
log p-value:-2.380e+01
Information Content per bp:1.752
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets34.5 +/- 21.9bp
Average Position of motif in Background46.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGTTTAAACA--
TGCCAAAATAAACANN
 A C G T A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCCAGTTTAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCAGTTTAAACA
-NCTAAGTAAACA
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCAGTTTAAACA---
-NCWRWGTAAACANSV
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCCAGTTTAAACA--
---WWTRTAAACAVG
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCCAGTTTAAACA
TGGCAGTTGN----
 A C G T A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCAGTTTAAACA-
--WWATRTAAACAN
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T
A C G T A C G T G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

FOXA1/MA0148.3/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCCAGTTTAAACA----
--CAAAGTAAACANNNN
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXL1/MA0033.2/Jaspar

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GCCAGTTTAAACA
------GTAAACA
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCCAGTTTAAACA
---NATTCAAAT-
 A C T G A T G C G T A C C G T A A C T G A C G T C G A T C G A T T C G A C G T A G T C A A G T C C G T A
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T