Information for 4-YSCYGCSGCCGCGSCT (Motif 3)

A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C A G T C A C T G A G T C A C T G A C T G A G T C A T C G A C T G A G T C C T A G C T A G A T C G C T A G
p-value:1e-15
log p-value:-3.461e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.7 +/- 26.4bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EGR1/MA0162.2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-YSCYGCSGCCGCGSCT
CCCCCGCCCCCGCC---
 A C G T A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YSCYGCSGCCGCGSCT
--CAACGTCCGCGG--
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:YSCYGCSGCCGCGSCT
-TCCGCCCCCGCATT-
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A C G T G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:YSCYGCSGCCGCGSCT---
----NNGGCCACGCCTTTN
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YSCYGCSGCCGCGSCT
GCCCCGCCCCCTCCC--
 A C G T A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:YSCYGCSGCCGCGSCT
---CGCAGCTGCG---
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YSCYGCSGCCGCGSCT
GACCCCCCGCTGCGC--
 A C G T A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:YSCYGCSGCCGCGSCT--
------GGCCCCGCCCCC
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:forward strand
Alignment:YSCYGCSGCCGCGSCT
-------AGCGCGCC-
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:YSCYGCSGCCGCGSCT------
-------GGNGCGNCTGTTNNN
 A G T C A T G C A G T C A G T C A C T G A G T C A T G C C T A G A G T C A G T C A C T G A G T C A C T G A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T