Information for 6-TAAGTGCCTATCT (Motif 8)

A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
Reverse Opposite:
C G T A A T C G C G T A A C G T C G T A A C T G A C T G G T A C C G T A G T A C A C G T A C G T C G T A
p-value:1e-9
log p-value:-2.254e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 29.4bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGCCTATCT
TTAAGTGC------
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGCCTATCT
TTAAGTGCTT----
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TAAGTGCCTATCT
NTNNTTAAGTGGTTANN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGCCTATCT
TTAAGTGGN-----
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAAGTGCCTATCT
TTAAGTGGT-----
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TAAGTGCCTATCT
NTNNTTAAGTGGNTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAAGTGCCTATCT
TTRAGTGSYK----
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAAGTGCCTATCT
CTAATKGV------
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TAAGTGCCTATCT
GCTAATTGCT-----
 A C G T A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T A C G T A C G T A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TAAGTGCCTATCT
TTAATTG-------
 A C G T A C G T C G T A C G T A A C T G A C G T A C T G G T A C A G T C A C G T C G T A A C G T A T G C A C G T
C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T