p-value: | 1e-6 |
log p-value: | -1.530e+01 |
Information Content per bp: | 1.688 |
Number of Target Sequences with motif | 12.0 |
Percentage of Target Sequences with motif | 3.11% |
Number of Background Sequences with motif | 214.8 |
Percentage of Background Sequences with motif | 0.44% |
Average Position of motif in Targets | 51.7 +/- 31.3bp |
Average Position of motif in Background | 51.6 +/- 26.2bp |
Strand Bias (log2 ratio + to - strand density) | 1.9 |
Multiplicity (# of sites on avg that occur together) | 1.17 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer
Match Rank: | 1 |
Score: | 0.65 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CCTGACCTGACTA --TGACCTYA--- |
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MF0004.1_Nuclear_Receptor_class/Jaspar
Match Rank: | 2 |
Score: | 0.60 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CCTGACCTGACTA --TGACCT----- |
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ZEB1/MA0103.2/Jaspar
Match Rank: | 3 |
Score: | 0.60 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CCTGACCTGACTA CCTCACCTG---- |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 4 |
Score: | 0.59 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --CCTGACCTGACTA- NNCNTGACCCCGCTCT |
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RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer
Match Rank: | 5 |
Score: | 0.59 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CCTGACCTGACTA --TGACCTARTT- |
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THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer
Match Rank: | 6 |
Score: | 0.59 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---CCTGACCTGACTA TGWCCTCARNTGACC- |
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RORA/MA0071.1/Jaspar
Match Rank: | 7 |
Score: | 0.57 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | CCTGACCTGACTA --TGACCTTGAT- |
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CRE(bZIP)/Promoter/Homer
Match Rank: | 8 |
Score: | 0.57 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CCTGACCTGACTA CGGTGACGTCAC-- |
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RORA(var.2)/MA0072.1/Jaspar
Match Rank: | 9 |
Score: | 0.57 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | CCTGACCTGACTA-- -TTGACCTANTTATN |
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SD0001.1_at_AC_acceptor/Jaspar
Match Rank: | 10 |
Score: | 0.56 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --CCTGACCTGACTA NNACTTACCTN---- |
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