Information for 7-TGTTAATGYGGGATCT (Motif 12)

C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
Reverse Opposite:
G C T A C T A G G T C A G A C T G A T C A G T C A G T C C T A G G T A C G C T A A C G T A C G T C G T A C G T A A G T C C G T A
p-value:1e-7
log p-value:-1.754e+01
Information Content per bp:1.637
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif57.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets45.6 +/- 29.6bp
Average Position of motif in Background50.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAATGYGGGATCT
AGGTGTTAAT---------
 A C G T A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TGTTAATGYGGGATCT
AAGGTGTKAA----------
 A C G T A C G T A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTTAATGYGGGATCT
TATGCWAATBAV------
 A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:TGTTAATGYGGGATCT-
---------NGGATTAN
 C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAATGYGGGATCT
CCTGTCAA----------
 A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--TGTTAATGYGGGATCT
GCTGTCAA----------
 A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--TGTTAATGYGGGATCT
WATGCAAATGAG------
 A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:TGTTAATGYGGGATCT-----
----NNNCTGATATCTCNNNN
 C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAATGYGGGATCT
NTGTCAN----------
 A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAATGYGGGATCT
NCNTTTGTTATTTNN------
 A C G T A C G T A C G T A C G T A C G T C G A T C T A G C G A T G C A T G T C A T C G A C A G T C A T G G A T C C T A G C T A G C A T G C T G A A C G T A G T C C A G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T