Information for 4-CAHTGCAAATAVC (Motif 5)

A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
Reverse Opposite:
A C T G A C T G A C G T C G T A C G A T A C G T A C G T A C T G A T G C C G T A C A T G C G A T A C T G
p-value:1e-11
log p-value:-2.676e+01
Information Content per bp:1.779
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif18.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets57.2 +/- 25.4bp
Average Position of motif in Background60.7 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CAHTGCAAATAVC
----GCACTTAA-
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAHTGCAAATAVC
ATATGCAAAT---
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAHTGCAAATAVC
TTATGCAAAT---
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CAHTGCAAATAVC
ATATGCAAATNNN
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

MSX2/MA0708.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CAHTGCAAATAVC
----CCAATTAA-
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAHTGCAAATAVC
-TATGCAAAT---
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAHTGCAAATAVC
----BCMATTAG-
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

Msx3/MA0709.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAHTGCAAATAVC
----CCAATTAA-
 A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
A C G T A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAHTGCAAATAVC
AATCGCACTGCATTCCG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAHTGCAAATAVC-
TTGTATGCAAATTAGA
 A C G T A C G T A G T C C G T A G T A C A C G T A T C G A G T C G T C A G T C A C G T A A C G T C G T A T A G C G T A C A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A