Information for 3-AAATWAWTATTMWTWW (Motif 5)

C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
Reverse Opposite:
C G A T C G A T G T C A C G T A A C T G C G T A C G T A A C G T C G T A C G T A A C G T C G A T C G T A A C G T A C G T A C G T
p-value:1e-11
log p-value:-2.637e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.4 +/- 17.1bp
Average Position of motif in Background22.1 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0018.1_Dbx1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAATWAWTATTMWTWW
TAATTAATTAATAATTA
 A C G T C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
G A C T G C T A C T G A G C A T G C A T G C T A C G T A G C A T G C A T C G T A G C T A G C A T C G T A T C G A C G A T C G A T C T G A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AAATWAWTATTMWTWW-
--ATGAATATTCATGAG
 C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A A C G T
A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAATWAWTATTMWTWW
AANTTATTGTTCTNNA
 C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATWAWTATTMWTWW
AAACAAACATTC----
 C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AAATWAWTATTMWTWW
NNTAATTATAATNANN--
 A C G T A C G T C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAATWAWTATTMWTWW
AAATTAATTAATC----
 A C G T C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T A C G T A C G T A C G T

PH0172.1_Tlx2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAATWAWTATTMWTWW
TAATTAATTAATAACTA
 A C G T C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
A C G T G C T A C T G A C G A T G A C T C G T A C G T A G A C T G A C T C T G A C G T A G C A T C G T A C T G A G A T C C G A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AAATWAWTATTMWTWW
----GAATATTCAT--
 C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AAATWAWTATTMWTWW
NNTAATTATAATTNNN--
 A C G T A C G T C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAATWAWTATTMWTWW
-AATTATT--------
 C G T A C G T A G T C A C G A T C G T A G T C A C G A T A C G T C G T A A C G T A C G T G T A C C G A T A C G T C G T A C G T A
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T