Information for 2-AAKATTARGACTGATT (Motif 3)

C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
Reverse Opposite:
C G T A C T G A C A G T G T A C C G T A A T C G A C G T A G T C G A T C C G A T C T G A G T C A A G C T G T A C A G C T A C G T
p-value:1e-12
log p-value:-2.834e+01
Information Content per bp:1.735
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.81%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.3 +/- 16.1bp
Average Position of motif in Background51.1 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAKATTARGACTGATT
CTAATATTGCTAAA----
 A C G T A C G T C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAKATTARGACTGATT
CTAATATTGCTAAA----
 A C G T A C G T C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:AAKATTARGACTGATT--
----------TTGATTGN
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:AAKATTARGACTGATT--
--------CNGTGATTTN
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

SOX4/MA0867.1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-AAKATTARGACTGATT
GAACAATTGCAGTGTT-
 A C G T C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:6
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:AAKATTARGACTGATT
AACACTACCATTGTT-
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AAKATTARGACTGATT
AACAATTTCAGTGTT-
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:8
Score:0.48
Offset:6
Orientation:forward strand
Alignment:AAKATTARGACTGATT
------ATGACTCAT-
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.47
Offset:6
Orientation:reverse strand
Alignment:AAKATTARGACTGATT
------TTGACTTTT-
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.47
Offset:3
Orientation:forward strand
Alignment:AAKATTARGACTGATT--
---ACCGTGACTAATTNN
 C G T A C T G A C A T G C T G A A C G T A G C T C G T A C T A G C T A G G T C A A T G C C G A T A C T G G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A