Information for 3-CTYTGGSCTAKGT (Motif 8)

A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C G T A C A C G T C G T A T A C G A T C G A G T C A G T C C G T A C T A G C G T A A C T G
p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.809
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif6.78%
Number of Background Sequences with motif28.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.0 +/- 20.9bp
Average Position of motif in Background50.3 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTYTGGSCTAKGT
TGGACTTTGNNCTNTG-
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTYTGGSCTAKGT--
GYCTGGYYTNTGTCA
 A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T A C G T A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CTYTGGSCTAKGT
TGGACTTTGNNCTCN--
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTYTGGSCTAKGT
--TTGGCA-----
 A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTYTGGSCTAKGT
TGACCTTTGCCCTAN--
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTYTGGSCTAKGT
TGACCTTTGCCCCA---
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTYTGGSCTAKGT
GTCTGTGGTTT----
 A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTYTGGSCTAKGT
TGACCTTTGCCCTA---
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTYTGGSCTAKGT
-NTTGGCANN---
 A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTYTGGSCTAKGT
GGTCTGGCAT----
 A C G T A G T C A C G T A G C T A C G T A C T G A C T G A T C G A G T C G A C T G T C A A C G T A C T G A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T