Information for 1-RAGGMYAGGSCSC (Motif 6)

C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
Reverse Opposite:
A C T G A T C G A C T G A T G C A G T C A G T C A C G T C T A G A C T G A G T C A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.871e+01
Information Content per bp:1.850
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif5.08%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.3 +/- 17.5bp
Average Position of motif in Background62.9 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:RAGGMYAGGSCSC-
CAGGCCNNGGCCNN
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:RAGGMYAGGSCSC
----CTAGGCCT-
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RAGGMYAGGSCSC
CAAGGHCANV----
 A C G T C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RAGGMYAGGSCSC
TRAGGTCA------
 A C G T C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RAGGMYAGGSCSC
CAAAGGTCAG-----
 A C G T A C G T C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RAGGMYAGGSCSC
AAGGTCAC-----
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RAGGMYAGGSCSC
---GCTCGGSCTC
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
A C G T A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:RAGGMYAGGSCSC
----CNAGGCCT-
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RAGGMYAGGSCSC
AAGGCAAGTGT--
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

KLF13/MA0657.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RAGGMYAGGSCSC------
-ATGCCACGCCCCTTTTTG
 C T A G C G T A A C T G A C T G G T A C A G T C C G T A A C T G A C T G A T C G A G T C T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G