Information for 4-GCACTSAGSTCAGMAT (Motif 4)

A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
Reverse Opposite:
T C G A G A C T A C T G A G T C A C G T C T A G C G T A T A C G A T G C A C G T A T C G G C T A C T A G C G A T C T A G A G T C
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.659
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif10.17%
Number of Background Sequences with motif105.7
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets64.7 +/- 17.2bp
Average Position of motif in Background49.2 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
---CAAAGGTCAG---
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
----TRAGGTCA----
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
--ATCAAGGTCA----
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
------AGGTCA----
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
-----AAGGTCAC---
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCACTSAGSTCAGMAT
NGAGGTCANNGAGTTCANNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
----AGRGGTCA----
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GCACTSAGSTCAGMAT---
--------GTCAGCANNTN
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCACTSAGSTCAGMAT
---CAAAGGTCAAGGG
 A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Vdr/MA0693.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCACTSAGSTCAGMAT
GAGTTCATTGAGTTCA----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C A G T T A G C C G T A A T C G A T G C C G A T A G T C G T C A A C T G T G A C C G T A A C G T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A A C G T A C G T A C G T A C G T