Information for 5-GGCASCAGAG (Motif 3)

A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G
Reverse Opposite:
T G A C G C A T G A T C G C A T C T A G T A C G G A C T C T A G T G A C T G A C
p-value:1e-23
log p-value:-5.357e+01
Information Content per bp:1.565
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif178.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets49.6 +/- 21.4bp
Average Position of motif in Background49.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)2.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0112.1_E2F2_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGCASCAGAG--
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

E2F1/MA0024.3/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCASCAGAG
TTTGGCGCCAAA-
 A C G T A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGCASCAGAG--
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCASCAGAG-
-ATGCCAGACN
 A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0041.1_Mafb_1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCASCAGAG--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCASCAGAG----
----CCAGACRSVB
 A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCASCAGAG--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCASCAGAG-------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GGCASCAGAG--
----CCAGACAG
 A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCASCAGAG-
GTCAGCANNTN
 A C T G A C T G A G T C C T G A A T G C G A T C C G T A C T A G C G T A A C T G A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T