Information for 12-GAAATTGTTA (Motif 15)

A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A
Reverse Opposite:
C G A T T G C A C G T A G T A C C G T A C T G A A C G T A C G T G A C T A G T C
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.850
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif336.5
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets48.7 +/- 28.1bp
Average Position of motif in Background50.9 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GAAATTGTTA----
AAAATTGTTATGAA
 A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---GAAATTGTTA----
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GAAATTGTTA
---ATTGTTA
 A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A
A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAAATTGTTA---
CTATAATTGTTAGCG
 A C G T A C G T A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:GAAATTGTTA--
---ATTGTTTAN
 A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GAAATTGTTA
---ATTGTT-
 A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A
A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAAATTGTTA-----
-TAATTGTTCTAAAC
 A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox11/MA0869.1/Jaspar

Match Rank:8
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------GAAATTGTTA
AACACTGAAATTGTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GAAATTGTTA--
NNATNAATTGTTTNN
 A C G T A C G T A C G T A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GAAATTGTTA-----
TTCAATTGTTCTAAAA
 A C G T A C T G C G T A C G T A G T C A A G C T A C G T A C T G C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A