Information for 9-CTGCATGATAAAA (Motif 9)

A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T C G A T A C G T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A C T A G
p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 25.8bp
Average Position of motif in Background64.6 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGCATGATAAAA
ATTTGCATAACAAAG
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

GATA5/MA0766.1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CTGCATGATAAAA
-----AGATAAGA
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CTGCATGATAAAA
-----AGATAASR
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGCATGATAAAA--
-TACTGGAAAAAAAA
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A A C G T A C G T
A C G T G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CTGCATGATAAAA-
----GTCATAAAAN
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGCATGATAAAA
---NBWGATAAGR
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
A C G T A C G T A C G T T A C G A T G C G C T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCATGATAAAA
ATTTGCATAACAATG
 A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

GATA3/MA0037.2/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTGCATGATAAAA
-----AGATAAGA
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTGCATGATAAAA
----GCAATAAAA
 A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTGCATGATAAAA
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C C G T A C G A T A C T G C G T A A C G T G T C A C G T A C G T A G T C A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T