Information for 13-CTTTTGACCT (Motif 17)

A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T
Reverse Opposite:
C T G A C T A G T A C G C A G T A G T C G T C A T C G A C T G A C G T A C T A G
p-value:1e-9
log p-value:-2.242e+01
Information Content per bp:1.790
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.95%
Number of Background Sequences with motif42.7
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets48.0 +/- 27.4bp
Average Position of motif in Background54.7 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarg/MA0859.1/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTTGACCT-
TTGACCTTTTGACCTT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTGACCT--
TGACCTTTTGACCTTT
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CTTTTGACCT---
CNNTTGACCTTTG
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T A C G T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

RARA/MA0729.1/Jaspar

Match Rank:4
Score:0.77
Offset:-7
Orientation:reverse strand
Alignment:-------CTTTTGACCT-
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:5
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTGACCT-
TGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTTTTGACCT
----TGACCT
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTTTTGACCT--
----TGACCTYA
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CTTTTGACCT----
----TGACCTTGAT
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CTTTTGACCT-
---GTGACCTT
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CTTTTGACCT--
----TGACCYCT
 A G T C A C G T A G C T A G C T A C G T A C T G G T C A A T G C A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T