Information for 10-AGGCCAGACW (Motif 12)

C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
Reverse Opposite:
C G T A C A T G C A G T G T A C C G A T A C T G A T C G G T A C G A T C G C A T
p-value:1e-11
log p-value:-2.603e+01
Information Content per bp:1.705
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif7.05%
Number of Background Sequences with motif185.3
Percentage of Background Sequences with motif2.43%
Average Position of motif in Targets54.7 +/- 25.3bp
Average Position of motif in Background51.4 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGGCCAGACW
ATGCCAGACN
 C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:AGGCCAGACW-
---CCAGACAG
 C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGGCCAGACW---
---CCAGACRSVB
 C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGCCAGACW-----
CAAATCCAGACATCACA
 A C G T A C G T C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGGCCAGACW
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGCCAGACW
TRAGGTCA----
 A C G T A C G T C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AGGCCAGACW-
---BCAGACWA
 C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGCCAGACW
AAGGTCAC---
 A C G T C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGCCAGACW
CAAGGHCANV--
 A C G T A C G T C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCCAGACW
AGGTCA----
 C G T A C T A G C A T G A T G C A G T C C G T A C A T G G T C A G T A C G C A T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T