Information for 12-RCAGARCCCAGMA (Motif 11)

T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
Reverse Opposite:
A C G T A C G T A G T C A C G T A C T G C T A G A T C G A G T C A C G T A T G C A C G T A C T G A G C T
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.774
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets40.0 +/- 29.0bp
Average Position of motif in Background53.3 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RCAGARCCCAGMA
-CAAAGGTCAG--
 T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--RCAGARCCCAGMA
TGACANARRCCAGRC
 A C G T A C G T T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:RCAGARCCCAGMA
------CACAGN-
 T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RCAGARCCCAGMA-----
---GAGCACAGCAGGACA
 T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RCAGARCCCAGMA-----
---CCACACAGCAGGAGA
 T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RCAGARCCCAGMA-----
---CCACACAGCAGGAGA
 T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------RCAGARCCCAGMA
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---RCAGARCCCAGMA-
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----RCAGARCCCAGMA
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----RCAGARCCCAGMA
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G T G C A C T A G A T G C G A T C A G T C C G T A A C T G G T C A G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T