Information for 1-TDYCCAGGCACAAAGG (Motif 1)

C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
Reverse Opposite:
A G T C G A T C A G C T A G C T A C G T T A C G G A C T C A T G A G T C G T A C A C G T A C T G C A T G T C G A G A T C G C T A
p-value:1e-15
log p-value:-3.520e+01
Information Content per bp:1.595
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif6.98%
Number of Background Sequences with motif607.8
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets50.3 +/- 24.5bp
Average Position of motif in Background47.4 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG
------GGAACAAAGR
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG
------AAAACAAAGG
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TDYCCAGGCACAAAGG----
---AGAAGAACAAAGGACTA
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TDYCCAGGCACAAAGG----
---ATAAGAACAAAGGACTA
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG
--------AACAAAGG
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG
------VRRACAAWGG
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG-
-------GAACAATGGN
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:TDYCCAGGCACAAAGG
--------RACAAWGG
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TDYCCAGGCACAAAGG---
---AAACAGACAAAGGAAT
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TDYCCAGGCACAAAGG
---CCAGGAACAG---
 C A G T C A T G A G C T G T A C G T A C C G T A C A T G C T A G G T A C C T G A A T G C T G C A T C G A C T G A C T A G T C A G
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T