Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-119 | -2.741e+02 | 0.0000 | 147.0 | 17.15% | 544.1 | 1.16% | motif file (matrix) |
svg |
2 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-116 | -2.677e+02 | 0.0000 | 177.0 | 20.65% | 970.3 | 2.07% | motif file (matrix) |
svg |
3 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-78 | -1.800e+02 | 0.0000 | 78.0 | 9.10% | 177.9 | 0.38% | motif file (matrix) |
svg |
4 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-19 | -4.562e+01 | 0.0000 | 109.0 | 12.72% | 2205.1 | 4.70% | motif file (matrix) |
svg |
5 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-15 | -3.628e+01 | 0.0000 | 102.0 | 11.90% | 2272.2 | 4.84% | motif file (matrix) |
svg |
6 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-14 | -3.277e+01 | 0.0000 | 62.0 | 7.23% | 1072.9 | 2.28% | motif file (matrix) |
svg |
7 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-14 | -3.239e+01 | 0.0000 | 86.0 | 10.04% | 1854.6 | 3.95% | motif file (matrix) |
svg |
8 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-13 | -3.207e+01 | 0.0000 | 55.0 | 6.42% | 884.3 | 1.88% | motif file (matrix) |
svg |
9 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-12 | -2.980e+01 | 0.0000 | 59.0 | 6.88% | 1056.2 | 2.25% | motif file (matrix) |
svg |
10 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-12 | -2.968e+01 | 0.0000 | 101.0 | 11.79% | 2490.8 | 5.30% | motif file (matrix) |
svg |
11 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-12 | -2.931e+01 | 0.0000 | 52.0 | 6.07% | 860.3 | 1.83% | motif file (matrix) |
svg |
12 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-11 | -2.650e+01 | 0.0000 | 22.0 | 2.57% | 172.7 | 0.37% | motif file (matrix) |
svg |
13 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-11 | -2.603e+01 | 0.0000 | 35.0 | 4.08% | 463.9 | 0.99% | motif file (matrix) |
svg |
14 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-11 | -2.570e+01 | 0.0000 | 60.0 | 7.00% | 1202.5 | 2.56% | motif file (matrix) |
svg |
15 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-11 | -2.542e+01 | 0.0000 | 45.0 | 5.25% | 748.0 | 1.59% | motif file (matrix) |
svg |
16 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-10 | -2.489e+01 | 0.0000 | 85.0 | 9.92% | 2102.3 | 4.48% | motif file (matrix) |
svg |
17 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.487e+01 | 0.0000 | 28.0 | 3.27% | 313.2 | 0.67% | motif file (matrix) |
svg |
18 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-10 | -2.463e+01 | 0.0000 | 81.0 | 9.45% | 1966.6 | 4.19% | motif file (matrix) |
svg |
19 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-10 | -2.400e+01 | 0.0000 | 63.0 | 7.35% | 1357.0 | 2.89% | motif file (matrix) |
svg |
20 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-9 | -2.189e+01 | 0.0000 | 63.0 | 7.35% | 1431.8 | 3.05% | motif file (matrix) |
svg |
21 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-9 | -2.177e+01 | 0.0000 | 35.0 | 4.08% | 544.5 | 1.16% | motif file (matrix) |
svg |
22 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-8 | -2.069e+01 | 0.0000 | 56.0 | 6.53% | 1232.6 | 2.63% | motif file (matrix) |
svg |
23 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-8 | -1.976e+01 | 0.0000 | 66.0 | 7.70% | 1622.8 | 3.46% | motif file (matrix) |
svg |
24 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-8 | -1.923e+01 | 0.0000 | 63.0 | 7.35% | 1536.0 | 3.27% | motif file (matrix) |
svg |
25 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-8 | -1.911e+01 | 0.0000 | 63.0 | 7.35% | 1540.6 | 3.28% | motif file (matrix) |
svg |
26 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-7 | -1.751e+01 | 0.0000 | 67.0 | 7.82% | 1760.7 | 3.75% | motif file (matrix) |
svg |
27 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-7 | -1.705e+01 | 0.0000 | 76.0 | 8.87% | 2131.7 | 4.54% | motif file (matrix) |
svg |
28 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-7 | -1.676e+01 | 0.0000 | 60.0 | 7.00% | 1532.8 | 3.26% | motif file (matrix) |
svg |
29 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-6 | -1.597e+01 | 0.0000 | 121.0 | 14.12% | 4085.0 | 8.70% | motif file (matrix) |
svg |
30 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-6 | -1.529e+01 | 0.0000 | 54.0 | 6.30% | 1375.9 | 2.93% | motif file (matrix) |
svg |
31 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-5 | -1.329e+01 | 0.0000 | 39.0 | 4.55% | 915.7 | 1.95% | motif file (matrix) |
svg |
32 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.164e+01 | 0.0001 | 61.0 | 7.12% | 1842.3 | 3.92% | motif file (matrix) |
svg |
33 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.152e+01 | 0.0001 | 22.0 | 2.57% | 407.6 | 0.87% | motif file (matrix) |
svg |
34 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-4 | -1.019e+01 | 0.0004 | 35.0 | 4.08% | 901.9 | 1.92% | motif file (matrix) |
svg |
35 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-4 | -1.012e+01 | 0.0004 | 16.0 | 1.87% | 263.8 | 0.56% | motif file (matrix) |
svg |
36 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-4 | -9.584e+00 | 0.0007 | 61.0 | 7.12% | 1980.3 | 4.22% | motif file (matrix) |
svg |
37 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -9.189e+00 | 0.0010 | 31.0 | 3.62% | 798.2 | 1.70% | motif file (matrix) |
svg |
38 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-3 | -9.152e+00 | 0.0010 | 57.0 | 6.65% | 1842.7 | 3.92% | motif file (matrix) |
svg |
39 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-3 | -8.780e+00 | 0.0014 | 35.0 | 4.08% | 970.2 | 2.07% | motif file (matrix) |
svg |
40 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-3 | -8.429e+00 | 0.0020 | 97.0 | 11.32% | 3687.3 | 7.85% | motif file (matrix) |
svg |
41 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-3 | -8.065e+00 | 0.0028 | 95.0 | 11.09% | 3634.5 | 7.74% | motif file (matrix) |
svg |
42 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-3 | -7.793e+00 | 0.0036 | 42.0 | 4.90% | 1309.3 | 2.79% | motif file (matrix) |
svg |
43 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-3 | -7.620e+00 | 0.0042 | 95.0 | 11.09% | 3684.4 | 7.85% | motif file (matrix) |
svg |
44 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-3 | -7.602e+00 | 0.0042 | 63.0 | 7.35% | 2226.6 | 4.74% | motif file (matrix) |
svg |
45 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-3 | -7.091e+00 | 0.0067 | 88.0 | 10.27% | 3418.2 | 7.28% | motif file (matrix) |
svg |
46 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -6.813e+00 | 0.0087 | 39.0 | 4.55% | 1251.1 | 2.66% | motif file (matrix) |
svg |
47 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -6.813e+00 | 0.0087 | 101.0 | 11.79% | 4066.0 | 8.66% | motif file (matrix) |
svg |
48 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.758e+00 | 0.0088 | 73.0 | 8.52% | 2760.4 | 5.88% | motif file (matrix) |
svg |
49 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.483e+00 | 0.0114 | 29.0 | 3.38% | 861.9 | 1.84% | motif file (matrix) |
svg |
50 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -6.367e+00 | 0.0125 | 9.0 | 1.05% | 146.4 | 0.31% | motif file (matrix) |
svg |
51 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -6.242e+00 | 0.0139 | 20.0 | 2.33% | 523.6 | 1.12% | motif file (matrix) |
svg |
52 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -6.161e+00 | 0.0148 | 81.0 | 9.45% | 3200.4 | 6.82% | motif file (matrix) |
svg |
53 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -6.145e+00 | 0.0148 | 67.0 | 7.82% | 2550.3 | 5.43% | motif file (matrix) |
svg |
54 |
| NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.125e+00 | 0.0148 | 7.0 | 0.82% | 96.9 | 0.21% | motif file (matrix) |
svg |
55 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.083e+00 | 0.0151 | 38.0 | 4.43% | 1262.5 | 2.69% | motif file (matrix) |
svg |
56 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -6.063e+00 | 0.0151 | 33.0 | 3.85% | 1052.8 | 2.24% | motif file (matrix) |
svg |
57 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.979e+00 | 0.0162 | 51.0 | 5.95% | 1840.2 | 3.92% | motif file (matrix) |
svg |
58 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -5.782e+00 | 0.0193 | 54.0 | 6.30% | 1994.5 | 4.25% | motif file (matrix) |
svg |
59 |
| E-box(bHLH)/Promoter/Homer | 1e-2 | -5.724e+00 | 0.0198 | 9.0 | 1.05% | 161.3 | 0.34% | motif file (matrix) |
svg |
60 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -5.724e+00 | 0.0198 | 9.0 | 1.05% | 161.4 | 0.34% | motif file (matrix) |
svg |
61 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-2 | -5.657e+00 | 0.0208 | 41.0 | 4.78% | 1426.2 | 3.04% | motif file (matrix) |
svg |
62 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.628e+00 | 0.0211 | 55.0 | 6.42% | 2055.4 | 4.38% | motif file (matrix) |
svg |
63 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-2 | -5.508e+00 | 0.0234 | 26.0 | 3.03% | 799.2 | 1.70% | motif file (matrix) |
svg |
64 |
| PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.489e+00 | 0.0235 | 9.0 | 1.05% | 168.0 | 0.36% | motif file (matrix) |
svg |
65 |
| GFY-Staf(?,Zf)/Promoter/Homer | 1e-2 | -5.486e+00 | 0.0235 | 7.0 | 0.82% | 108.7 | 0.23% | motif file (matrix) |
svg |
66 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.267e+00 | 0.0284 | 55.0 | 6.42% | 2093.3 | 4.46% | motif file (matrix) |
svg |
67 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.216e+00 | 0.0295 | 38.0 | 4.43% | 1332.8 | 2.84% | motif file (matrix) |
svg |
68 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.134e+00 | 0.0316 | 21.0 | 2.45% | 619.3 | 1.32% | motif file (matrix) |
svg |
69 |
| GFY(?)/Promoter/Homer | 1e-2 | -4.915e+00 | 0.0387 | 8.0 | 0.93% | 151.5 | 0.32% | motif file (matrix) |
svg |
70 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-2 | -4.910e+00 | 0.0387 | 218.0 | 25.44% | 10275.1 | 21.88% | motif file (matrix) |
svg |
71 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-2 | -4.823e+00 | 0.0413 | 14.0 | 1.63% | 363.8 | 0.77% | motif file (matrix) |
svg |
72 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-2 | -4.797e+00 | 0.0417 | 50.0 | 5.83% | 1914.0 | 4.08% | motif file (matrix) |
svg |
73 |
| Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer | 1e-2 | -4.767e+00 | 0.0424 | 32.0 | 3.73% | 1107.5 | 2.36% | motif file (matrix) |
svg |
74 |
| NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-2 | -4.699e+00 | 0.0448 | 6.0 | 0.70% | 96.5 | 0.21% | motif file (matrix) |
svg |
75 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.605e+00 | 0.0485 | 78.0 | 9.10% | 3264.6 | 6.95% | motif file (matrix) |
svg |