Information for 9-GARACSTGCA (Motif 22)

A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
Reverse Opposite:
A C G T C T A G G A T C G T C A A T C G T A C G C G A T A G C T G A C T A T G C
p-value:1e-3
log p-value:-9.117e+00
Information Content per bp:1.653
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif123.4
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets53.5 +/- 21.5bp
Average Position of motif in Background49.3 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes2/MA0616.1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GARACSTGCA
TAACGACACGTGC-
 A C G T A C G T A C G T A C G T A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GARACSTGCA-----
TCGTACCCGCATCATT
 A C G T A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GARACSTGCA-
SNGCACCTGCHS
 A C G T A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GARACSTGCA
-RTACGTGC-
 A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T

HEY2/MA0649.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GARACSTGCA
GACACGTGCC
 A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GARACSTGCA--
--TACCCGCATN
 A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A A C G T A C G T
A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GARACSTGCA--
-GTACCCGCATN
 A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A A C G T A C G T
A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GARACSTGCA---
GAAAAAATTGCAAGG
 A C G T A C G T A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GARACSTGCA
-NCACCTGTN
 A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GARACSTGCA
GGGTACGTGC-
 A C G T A T C G C T G A T C G A G C T A A T G C T A G C C A G T C T A G A G T C C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T