Information for 10-TCCKTGTGTCTGSCWA (Motif 19)

A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
Reverse Opposite:
A G C T C G T A A C T G A T G C A G T C C G T A C T A G C T G A A G T C C G T A A G T C C T G A T G A C A C T G A C T G C G T A
p-value:1e-6
log p-value:-1.384e+01
Information Content per bp:1.885
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.7 +/- 16.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA
-----CTGTCTGG---
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA
---VBSYGTCTGG---
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCCKTGTGTCTGSCWA--
-NNTNNTGTCTGGNNTNG
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A A C G T A C G T
A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:TCCKTGTGTCTGSCWA--
------TGTCTGDCACCT
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA
------GGTCTGGCAT
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA
-----TWGTCTGV---
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA--
-----CTGTCTGTCACCT
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TCCKTGTGTCTGSCWA
----TGGGTGTGGC--
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T A C G T A C G T A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA
-CCATGTGCTT-----
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A
A C G T T G A C A G T C C G T A A G C T A C T G A C G T A C T G A T G C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TCCKTGTGTCTGSCWA-
---------TTGCCAAG
 A C G T G T A C A G T C A C G T A G C T C T A G A C G T A C T G A G C T A G T C A C G T A C T G A T C G A G T C C G A T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G