Information for 10-CCAGCAVAGAAAT (Motif 15)

A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
Reverse Opposite:
G T C A A C G T A G C T A C G T A G T C A C G T A C T G C G A T A C T G A G T C A G C T C T A G A C T G
p-value:1e-7
log p-value:-1.836e+01
Information Content per bp:1.845
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.7 +/- 26.8bp
Average Position of motif in Background58.5 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAVAGAAAT--
CGAAGCACACAAAATA
 A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCAVAGAAAT
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCAGCAVAGAAAT
-CAGCC-------
 A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAGCAVAGAAAT
CCTGCTGAGH---
 A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAVAGAAAT
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCAGCAVAGAAAT
HCAGCTGDTN---
 A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CCAGCAVAGAAAT
CCAGCTGTTN---
 A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAVAGAAAT
GTCAGCANNTN---
 A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAVAGAAAT
ANCAGCTG------
 A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAVAGAAAT
CCAGGAACAG----
 A C G T A G T C A G T C C T G A A C T G A G T C C G T A T A G C C G T A A C T G C G T A C T G A G T C A A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T