Information for 5-CTTTTAAAGC (Motif 13)

A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C
Reverse Opposite:
T C A G G A T C G C A T G C A T C A G T C G T A G T C A C G T A C T G A T C A G
p-value:1e-8
log p-value:-1.894e+01
Information Content per bp:1.666
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif360.1
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets40.6 +/- 24.7bp
Average Position of motif in Background49.5 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAAAGC-
CCTTTTATAGNC
 A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTTTTAAAGC-
-TTTGAAACCG
 A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTTTTAAAGC-
-TTTAATTGCN
 A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTAAAGC
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTTTTAAAGC
-ATTTGAATT
 A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CTTTTAAAGC
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAAAGC-----
TCNCTTTACAGCGNNNT
 A C G T A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAAAGC-----
TCNNTTTACAGCGNNNT
 A C G T A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAAAGC-----
TCNNTTTACAGCGNNNT
 A C G T A C G T A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTTTAAAGC--
-TTTTATGGCTN
 A G T C G A C T G C A T C A G T G C A T G T C A C G T A C G T A C T A G A G T C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T