Information for 7-TBCCCTTGHTGGGTGG (Motif 12)

A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A T G C A G T C A G T C C G T A C G T A A G T C C G T A C G T A A C T G C T A G A T C G T C G A C T G A
p-value:1e-8
log p-value:-1.924e+01
Information Content per bp:1.783
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.8 +/- 29.8bp
Average Position of motif in Background60.5 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:forward strand
Alignment:TBCCCTTGHTGGGTGG------
-----GTATTGGGTGGGTAATT
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG
-TCNCCTGCTGNGNNN
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TBCCCTTGHTGGGTGG
NNNNNATTGATGNGTGN
 A C G T A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG
-TNTCCTGCTGTGNNG
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TBCCCTTGHTGGGTGG---
-------CGTGGGTGGTCC
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

GLIS3/MA0737.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG--
----CTTCGTGGGGGGTC
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG
-CCCCCTGCTGTG---
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG----
----NNTNAGGGGCGGNNNN
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG-
-----ATGATKGATGRC
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

KLF5/MA0599.1/Jaspar

Match Rank:10
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:TBCCCTTGHTGGGTGG---
---------GGGGNGGGGC
 A G C T A C G T A T G C A G T C T G A C C G A T A C G T A C T G G A C T A C G T A C T G A C T G A T C G C G A T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C