Information for 5-DGCTGGCAAGATGCCC (Motif 16)

C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C G T C A A C G T A G T C A G C T A C G T A T C G G T A C A G T C C T G A A T C G A G T C G T A C
p-value:1e-6
log p-value:-1.492e+01
Information Content per bp:1.889
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.8 +/- 21.2bp
Average Position of motif in Background55.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:DGCTGGCAAGATGCCC
--CTGGCAGNCTGCCA
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:DGCTGGCAAGATGCCC--
--TTGGCANNNTGCCAAG
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:DGCTGGCAAGATGCCC-
---TGGCACCATGCCAA
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.59
Offset:10
Orientation:forward strand
Alignment:DGCTGGCAAGATGCCC---
----------ATGCCCACC
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:DGCTGGCAAGATGCCC
--TTGCCAAG------
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:DGCTGGCAAGATGCCC
GGTTGGCAT-------
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:DGCTGGCAAGATGCCC--
---GGTCANNGTGACCTN
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:forward strand
Alignment:DGCTGGCAAGATGCCC--
------CAAGATGGCGGC
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----DGCTGGCAAGATGCCC
NGTAGGTTGGCATNNN----
 A C G T A C G T A C G T A C G T C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:DGCTGGCAAGATGCCC
-NTTGGCANN------
 C A G T A C T G A T G C A G C T A C T G A C T G A T G C G T C A C T G A A C T G C G T A A C G T A C T G A G T C A G T C A G T C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T