Information for 2-RTTAATGATTAVA (Motif 3)

C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
Reverse Opposite:
C A G T A T C G A C G T C T G A C T G A C A G T A G T C G T C A A C G T A C G T G T C A G T C A G A C T
p-value:1e-14
log p-value:-3.257e+01
Information Content per bp:1.710
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif79.0
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.0 +/- 24.0bp
Average Position of motif in Background53.6 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:RTTAATGATTAVA
GTTAATNATTAA-
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A A C G T

HNF1A/MA0046.2/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-RTTAATGATTAVA-
AGTTAATGATTAACT
 A C G T C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A A C G T
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

HNF1B/MA0153.2/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:RTTAATGATTAVA
GTTAATGATTAAC
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:RTTAATGATTAVA-
-TTAATGTTTAACC
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A A C G T
A C G T A C G T G C A T C T G A G T C A G C A T T A C G C G A T C A G T G A C T G C T A C G T A G A T C G A T C

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:forward strand
Alignment:RTTAATGATTAVA
---AATAATT---
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RTTAATGATTAVA
GKTAATGR-----
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RTTAATGATTAVA
-TTAATTAN----
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:RTTAATGATTAVA
-TTAATTAN----
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T A C G T A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RTTAATGATTAVA-
AAGGTAATTAGCTCAT
 A C G T A C G T C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A A C G T
T G C A T G C A C T A G A T C G G A C T T G C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T T A G C C G T A C A G T

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RTTAATGATTAVA
NNTAATTANN---
 C T G A C A G T C A G T C G T A C G T A C A G T T C A G G C T A A G C T G A C T C G T A T A G C G T C A
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T A C G T A C G T