Information for 11-AGGTCAGCAG (Motif 20)

T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
Reverse Opposite:
A G T C C A G T C A T G A G T C C A G T T A C G C T G A G A T C T A G C A G C T
p-value:1e-8
log p-value:-1.853e+01
Information Content per bp:1.654
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.65%
Number of Background Sequences with motif789.4
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets55.0 +/- 24.3bp
Average Position of motif in Background50.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2F1/MA0017.2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAGCAG
CAAAGGTCAAGGG
 A C G T A C G T A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:AGGTCAGCAG---
--GTCAGCANNTN
 T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G A C G T A C G T A C G T
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGCAG
TRAGGTCA----
 A C G T A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGGTCAGCAG
AGGTCA----
 T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAGCAG
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCAGCAG
TGAGTCAGCA-
 A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAGCAG----
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G A C G T A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGCAG
AAGGTCAC---
 A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGCAG
AGRGGTCA----
 A C G T A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGCAG----
HWWGTCAGCAWWTTT
 A C G T T C G A A T C G C T A G G A C T A T G C G T C A T C A G G T A C G T C A T C A G A C G T A C G T A C G T A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T