Information for 5-CTCAGGKYWCCCWRGR (Motif 4)

A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
Reverse Opposite:
A G T C A G T C A G T C C G A T A C T G A C T G A C T G C G T A C T A G T G C A A G T C A G T C A C G T A C T G C T G A A C T G
p-value:1e-13
log p-value:-3.097e+01
Information Content per bp:1.841
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 27.4bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGKYWCCCWRGR
GKVTCADRTTWC------
 A C G T A C G T A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGGKYWCCCWRGR
GCCTCAGGGCAT------
 A C G T A C G T A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCAGGKYWCCCWRGR
GKMTCADRTTWC------
 A C G T A C G T A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CTCAGGKYWCCCWRGR--
------GTCCCCAGGGGA
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGKYWCCCWRGR
SCCTSAGGSCAW------
 A C G T A C G T A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CTCAGGKYWCCCWRGR----
--------TCCCNNGGGACN
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

Znf423/MA0116.1/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CTCAGGKYWCCCWRGR----
-----GGCACCCAGGGGTGC
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTCAGGKYWCCCWRGR
NNNGGGGCGCCCCCNN
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CTCAGGKYWCCCWRGR
-----HTTTCCCASG-
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CTCAGGKYWCCCWRGR-
--AAGGKGRCGCAGGCA
 A G T C A G C T A G T C G T C A C T A G A C T G A C G T A G T C C G A T A G T C A G T C A G T C G C T A C T A G A C T G C T A G A C G T
A C G T A C G T T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A