Information for 8-CTAATATTCAAAACTT (Motif 20)

G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
Reverse Opposite:
C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C T G G T C A C G T A C G A T C G T A A C G T A C G T C G T A A C T G
p-value:1e-8
log p-value:-1.944e+01
Information Content per bp:1.884
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.2 +/- 21.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
CTAATATTGCTAAA--
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
CTAATATTGCTAAA--
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
---ATATGCAAAT---
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTAATATTCAAAACTT
TNNATTATGCATANNTT
 A C G T G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTAATATTCAAAACTT
----NATTCAAAT---
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
--CGGTTTCAAA----
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
--AATATGCAAATT--
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTAATATTCAAAACTT
---TTATGCAAAT---
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTAATATTCAAAACTT
-GAATATTCAT-----
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTAATATTCAAAACTT
----TATGCAAAT---
 G T A C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A C G T A C G T A C G T A G T A C A C G T C G A T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T