Information for 4-CAGTGAGGCCTTCAGA (Motif 9)

A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G C T G A G T C A C T A G A C T G T G A C A T G C A C G T G A T C C G T A G T A C C G A T A C T G
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.889
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.2 +/- 16.2bp
Average Position of motif in Background31.6 +/- 12.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CAGTGAGGCCTTCAGA
-----AGGCCTNG---
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T

PH0014.1_Cphx/Jaspar

Match Rank:2
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CAGTGAGGCCTTCAGA
-NTTGATTNNATCAN-
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A C G T C G A T A G C T C G A T C T A G C G T A A C G T A C G T A T G C T A C G G T C A A C G T A G T C C G T A G A C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CAGTGAGGCCTTCAGA
---CTAGGCCT-----
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:CAGTGAGGCCTTCAGA
CNTTAAGTACTTAANG
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGAGGCCTTCAGA
SCAGYCADGCATGAC--
 A C G T A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.47
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGAGGCCTTCAGA
NNNNTGCCAGTGATTG-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGAGGCCTTCAGA
NNNNTTGACCCCTNNNN-
 A C G T A C G T A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.45
Offset:5
Orientation:reverse strand
Alignment:CAGTGAGGCCTTCAGA
-----TGACCTTGAN-
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.45
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGAGGCCTTCAGA
NNNANTGCAGTGCNNTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.45
Offset:1
Orientation:forward strand
Alignment:CAGTGAGGCCTTCAGA
-TGTGACTCATT----
 A G T C C G T A A C T G A C G T C T A G C G T A A T C G A C T G A G T C A G T C A C G T A G C T A G T C C G T A A C T G C G T A
A C G T C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T A C G T A C G T