Information for 9-CATTAACAAG (Motif 11)

A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T A C G T A T C G A C G T A C G T C G T A C G T A A C G T A C T G
p-value:1e-7
log p-value:-1.688e+01
Information Content per bp:1.947
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif29.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets49.0 +/- 29.6bp
Average Position of motif in Background56.7 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CATTAACAAG
YCATTAMC---
 A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CATTAACAAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CATTAACAAG
GGCCATTAAC---
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATTAACAAG
CTAATTAA----
 A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CATTAACAAG
-GTAAACAA-
 A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CATTAACAAG
GTAATTAA----
 A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CATTAACAAG
GGAGGTCATTAATTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CATTAACAAG
ACTAATTAGC---
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T A C G T

PH0150.1_Pou4f3/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CATTAACAAG-
GACNTCATTAATAANN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CATTAACAAG---
AAAAATAACAAACGG
 A C G T A C G T A G T C C G T A A C G T A C G T C G T A C G T A A T G C C G T A C T G A A C T G A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G