Information for 3-AAACAHTVACCTCCTC (Motif 7)

C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
Reverse Opposite:
A T C G C G T A C A T G A C T G C T G A A C T G A T C G A G C T A G T C C G T A C A G T A C G T A C T G A C G T A C G T A C G T
p-value:1e-11
log p-value:-2.708e+01
Information Content per bp:1.777
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.7 +/- 13.2bp
Average Position of motif in Background28.7 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAACAHTVACCTCCTC
NAACAAT---------
 C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAACAHTVACCTCCTC
GTAAACAAT---------
 A C G T A C G T C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AAACAHTVACCTCCTC
AATAAACAATN--------
 A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAACAHTVACCTCCTC
RAACAATGGN------
 C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AAACAHTVACCTCCTC
TCACGGAACAATAGGTG----
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAACAHTVACCTCCTC
VRAACAATGG-------
 A C G T C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAACAHTVACCTCCTC
CTCACACAATGGCGC----
 A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AAACAHTVACCTCCTC
-AACAAT---------
 C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAACAHTVACCTCCTC
GAACAATGG-------
 C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAACAHTVACCTCCTC
--ACAAAGGNBCCT--
 C G T A G T C A C G T A A G T C C G T A G C T A C G A T T C A G C T G A A T G C A G T C A G C T A G T C G T A C C G A T A T G C
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T