Information for 7-CAATTCAACA (Motif 11)

A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C G T A C T G C G T A C G T A A C G T A C G T A C T G
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 28.6bp
Average Position of motif in Background24.0 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CAATTCAACA---
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAACA
ATAAACAATTAAACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAATTCAACA--
SSAATCCACANN
 A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAATTCAACA
-AAATAAACA
 A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAACA--
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAACA--
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAATTCAACA
-NATTCAAAT
 A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAACA--
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAATTCAACA--
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAATTCAACA---
-AAACAAACATTC
 A G T C C G T A C G T A A C G T A C G T A G T C C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C