Information for 2-MSGCYSCCTGCCYTTT (Motif 3)

G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
Reverse Opposite:
G C T A C G T A C G T A C T A G A C T G A C T G A G T C C G T A A C T G T A C G A T C G C T G A A C T G A G T C A T G C C A G T
p-value:1e-10
log p-value:-2.528e+01
Information Content per bp:1.859
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 6.8bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:MSGCYSCCTGCCYTTT-
-------CTGACCTTTG
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.59
Offset:8
Orientation:forward strand
Alignment:MSGCYSCCTGCCYTTT----
--------TGACCTTTNCNT
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-MSGCYSCCTGCCYTTT
CTGGCAGNCTGCCA---
 A C G T G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----MSGCYSCCTGCCYTTT
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:MSGCYSCCTGCCYTTT----
----NNNNTGACCTTTNNNN
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MSGCYSCCTGCCYTTT
-CGCCCCCTGACA---
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:MSGCYSCCTGCCYTTT----
----NNNGTGACCTTTGNNN
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:MSGCYSCCTGCCYTTT
-------CTGCCCGCA
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:MSGCYSCCTGCCYTTT
-SNGCACCTGCHS---
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:MSGCYSCCTGCCYTTT
---NNACTTGCCTT--
 G T A C A T C G A C T G A G T C A G C T A T G C A G T C A G T C A C G T A C T G A G T C A G T C A G T C A C G T A C G T C A G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T