Information for 11-CCTGCCTGGCTCC (Motif 21)

A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C
Reverse Opposite:
A C T G C T A G G T C A A C T G A T G C A T G C T C G A A C T G C A T G T A G C C T G A A C T G A C T G
p-value:1e-6
log p-value:-1.556e+01
Information Content per bp:1.775
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif236.4
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets49.5 +/- 23.1bp
Average Position of motif in Background50.1 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTGCCTGGCTCC-
-CTGTCTGTCACCT
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTGCCTGGCTCC
GTCATGCHTGRCTGS
 A C G T A C G T A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0113.1_E2F3_2/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTGCCTGGCTCC-----
-NNNNTTGGCGCCGANNN
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CCTGCCTGGCTCC-
--------GCTCCG
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCTGCCTGGCTCC-----
-NNNNTTGGCGCCGANNN
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCTGCCTGGCTCC-
--TGTCTGDCACCT
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCTGCCTGGCTCC---------
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A C G T A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCTGGCTCC
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGCCTGGCTCC----
--TGCCTGCGYCMCCTT
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTGCCTGGCTCC
-CTGTCTGG----
 A G T C A G T C G A C T A T C G G A T C A G T C A C G T A T C G T A C G G T A C A C G T A G T C A G T C
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T