Information for 8-GCGGTCAGTCCAG (Motif 10)

A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
Reverse Opposite:
G T A C A C G T A C T G A C T G C T G A G T A C C G A T A C T G C G T A A G T C A G T C C T A G A G T C
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.8 +/- 10.0bp
Average Position of motif in Background67.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCGGTCAGTCCAG
-CNGTCACGCCAC
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCAGTCCAG
AGRGGTCA------
 A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGGTCAGTCCAG
---ATCACCCCAT
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCGGTCAGTCCAG
GGCGAGGGGTCAAGGGC-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCGGTCAGTCCAG
---ATCACCCCAT
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCGGTCAGTCCAG
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCGGTCAGTCCAG
-AGGTCA------
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCGGTCAGTCCAG
NCTGTCAATCAN-
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCAGTCCAG
TRAGGTCA------
 A C G T A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCGGTCAGTCCAG
SCTGTCAVTCAV-
 A C T G A G T C A C T G A C T G A C G T A G T C C G T A A C T G A G C T A G T C A G T C C G T A A C T G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T