Information for 6-GTCATGCATG (Motif 7)

A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G
Reverse Opposite:
G T A C C G T A C A G T A C T G A G T C T C G A A C G T A T C G C T G A A T G C
p-value:1e-17
log p-value:-3.979e+01
Information Content per bp:1.860
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets63.0 +/- 19.3bp
Average Position of motif in Background6.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCATG------
CGTCACGCATGACTGCA
 A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTCATGCATG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCATG------
CGTCACGCATGACTGCA
 A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GTCATGCATG-----
NGTCACGCTTGGCTGC
 A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTCATGCATG-
NNTNTCATGAATGT
 A C G T A C G T A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCATG
AGTCACGC---
 A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTCATGCATG
GTCATN----
 A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTCATGCATG--
AANTCATGCGTGAA
 A C G T A C G T A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTCATGCATG---------
GTCACGCTTGGCTGCNCNN
 A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GTCATGCATG
--CACGCA--
 A T C G A G C T A T G C C G T A A C G T A C T G A G T C G C T A A C G T A C T G
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T