Information for 20-KNTATGGCTA (Motif 35)

A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
Reverse Opposite:
A G C T C G T A C A T G A T G C G A T C C G T A G A C T T C G A A G C T T G A C
p-value:1e-8
log p-value:-2.071e+01
Information Content per bp:1.398
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif45.5
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets47.0 +/- 26.4bp
Average Position of motif in Background49.6 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-KNTATGGCTA
TTTTATGGCTN
 A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

NEUROD2/MA0668.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--KNTATGGCTA
ACCATATGGC--
 A C G T A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:KNTATGGCTA-
--NTTGGCANN
 A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:KNTATGGCTA
---TTGGCA-
 A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KNTATGGCTA
GGTCTGGCAT
 A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KNTATGGCTA
NTTTTATGAC--
 A C G T A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KNTATGGCTA
TTTTATTGC--
 A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--KNTATGGCTA
AACATATGTC--
 A C G T A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------KNTATGGCTA
TGNCCATATATGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:KNTATGGCTA--
-TAATGGCGGNC
 A C T G T C G A A G C T C T G A G C A T C T A G T A C G G T A C G C A T T C G A A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C