Information for 3-CAAGGCAAGCGAT (Motif 6)

A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
Reverse Opposite:
C G T A A C G T A T G C A C T G A T G C A C G T A C G T A T C G A G T C A G T C A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.358e+01
Information Content per bp:1.942
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.4 +/- 29.9bp
Average Position of motif in Background26.3 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAAGGCAAGCGAT
-AAGGCAAGTGT-
 A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAAGGCAAGCGAT
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAGGCAAGCGAT
CAAGGHCANV---
 A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCAAGCGAT
NTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCAAGCGAT
BTCAAGGTCA-----
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCAAGCGAT
ATAAAGGCGCGCGAT
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGCAAGCGAT
TCAAGGTCAN----
 A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAAGGCAAGCGAT
ATAAGGGCGCGCGAT
 A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGGCAAGCGAT
GTTGCCATGGCAACCG--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CAAGGCAAGCGAT
TTGCCATGGCAACC---
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C T G A T G C G T C A C G T A A T C G A G T C A T C G C G T A A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T