Information for 2-CTGTCAATCAAAC (Motif 2)

T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
Reverse Opposite:
C A T G A C G T A C G T A C G T C T A G C T G A A C G T A C G T A C T G C T G A G T A C C G T A A C T G
p-value:1e-29
log p-value:-6.852e+01
Information Content per bp:1.671
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif5.30%
Number of Background Sequences with motif246.4
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets51.5 +/- 20.7bp
Average Position of motif in Background51.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-CTGTCAATCAAAC
NCTGTCAATCAN--
 A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-CTGTCAATCAAAC
SCTGTCAVTCAV--
 A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--CTGTCAATCAAAC
GSCTGTCACTCA---
 A C G T A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CTGTCAATCAAAC
---CCAATCAA--
 T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCAATCAAAC
GCTGTCAA------
 A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCAATCAAAC
CCTGTCAA------
 A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAATCAAAC
AAGCACCTGTCAATAT---
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CTGTCAATCAAAC
AAAGACCTGTCAATCC---
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTGTCAATCAAAC
NTGTCAN------
 T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTGTCAATCAAAC
CCATCAATCAAA-
 T G A C G A C T A C T G A G C T T A G C T G C A T G C A A G C T A G T C G T C A T G C A T G C A G T A C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T