Information for 21-CCAGCAAAGTCCT (Motif 27)

A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C T G G T A C A C G T A C T G C T A G
p-value:1e-6
log p-value:-1.498e+01
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 22.4bp
Average Position of motif in Background50.2 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCAGCAAAGTCCT----
-GGCAAAAGTCCAATAA
 A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAAAGTCCT
AGAGTCCAAAGTCCA
 A C G T A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CCAGCAAAGTCCT
---GGAAATTCCC
 A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAAAGTCCT
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

MAFK/MA0496.1/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCAAAGTCCT
CTGAGTCAGCAATTT---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CCAGCAAAGTCCT
---GGAAATTCCC
 A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAAAGTCCT--
GGGGTCAAAGTCCAAT
 A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAAAGTCCT
GTCAGCANNTN---
 A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------CCAGCAAAGTCCT
NCTANGTCAGCAAATTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCAGCAAAGTCCT----
-ATGGAAAGTCGTAAAA
 A G T C A G T C C G T A C A T G A G T C C G T A C G T A C G T A T C A G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A