Information for 8-CAGCCADCCATGH (Motif 10)

A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
Reverse Opposite:
C G T A A G T C C G T A A C G T A C T G A T C G G C A T A C G T C T A G A T C G A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.853
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.0 +/- 21.7bp
Average Position of motif in Background43.2 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCADCCATGH-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CAGCCADCCATGH--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCADCCATGH-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCADCCATGH--
TGCAGTCATGCGTGACG
 A C G T A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGCCADCCATGH
CAGCC--------
 A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCCADCCATGH
ACTAGCCAATCA---
 A C G T A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCADCCATGH--
NGCANTCATGCGTGACG
 A C G T A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCADCCATGH
BCAGACWA------
 A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCADCCATGH
CACAGN---------
 A C G T A C G T A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAGCCADCCATGH
-TGCCAA------
 A G T C C G T A A C T G A T G C A G T C C G T A C G T A A T G C A G T C C G T A A C G T A C T G G A C T
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T