Information for 4-AAAGCTGGCA (Motif 12)

C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A
Reverse Opposite:
G A C T A T C G A G T C T G A C C T G A T A C G A G T C G A C T C G A T G C A T
p-value:1e-8
log p-value:-1.997e+01
Information Content per bp:1.661
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif11.88%
Number of Background Sequences with motif3002.0
Percentage of Background Sequences with motif6.33%
Average Position of motif in Targets50.4 +/- 25.8bp
Average Position of motif in Background51.6 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:AAAGCTGGCA-
--GGTTGGCAT
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AAAGCTGGCA--
---NTTGGCANN
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AAAGCTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:AAAGCTGGCA
--ARNTGACA
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AAAGCTGGCA-
---CTTGGCAA
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AAAGCTGGCA
NAACAGCTGG--
 A C G T A C G T C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.70
Offset:4
Orientation:forward strand
Alignment:AAAGCTGGCA
----TTGGCA
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AAAGCTGGCA-----
NNNCAGCTGTCAATATN
 A C G T A C G T C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAGCTGGCA----
AACTAGCTGTCAATAC
 A C G T A C G T C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T A C G T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AAAGCTGGCA--
--VGCTGWCAVB
 C G T A G C T A C T G A T C A G A T G C G A C T A C T G T C A G T A G C C T G A A C G T A C G T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C