Information for 6-GAGTAGCAGCCAG (Motif 7)

A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
Reverse Opposite:
A G T C A G C T A C T G A C T G A G T C A C G T A C T G A T G C A C G T C G T A A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.973e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 28.6bp
Average Position of motif in Background18.6 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Spz1/MA0111.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GAGTAGCAGCCAG
AGGGTAACAGC---
 A C G T A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAGTAGCAGCCAG
ADGGYAGYAGCATCT--
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAGCAGCCAG
TGAGTGACAGSC--
 A C G T A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAGTAGCAGCCAG
-----BCAGACWA
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GAGTAGCAGCCAG
-----CCAGACAG
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GAGTAGCAGCCAG
------CAGCC--
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGTAGCAGCCAG
-AGCAGCTGCT--
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGTAGCAGCCAG--
-----CCAGACRSVB
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAGCAGCCAG
TGGCAGNCTGCCAG
 A C G T A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGTAGCAGCCAG
GAGSCCGAGC---
 A C T G C G T A A C T G G A C T C G T A A T C G A G T C C G T A A C T G A G T C A G T C C T G A A C T G
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T