Information for 5-TGCCCACAGCAGT (Motif 6)

C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T A C T G A G T C A C G T A C T G C G A T A C T G A C T G A T C G A G T C C G T A
p-value:1e-9
log p-value:-2.147e+01
Information Content per bp:1.897
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 19.9bp
Average Position of motif in Background65.4 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TGCCCACAGCAGT---
----CACAGCAGGGGG
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCCACAGCAGT
ATGCCCACC-----
 A C G T C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCCACAGCAGT
CTGCCCGCA-----
 A C G T C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCCCACAGCAGT---
AATCGCACTGCATTCCG
 A C G T C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGCCCACAGCAGT
----CACAGN---
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCCACAGCAGT
AAACCACAGC---
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGCCCACAGCAGT---
-CCACACAGCAGGAGA
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TGCCCACAGCAGT--
-----ACAGCTGTTV
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A T A C G A T G C A C G T A C T G A G C T A G C T T G C A

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCCACAGCAGT
AAACCACAGAN--
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGCCCACAGCAGT---
-GAGCACAGCAGGACA
 C G A T A C T G A T G C A G T C A G T C C G T A A G T C G T C A A C T G A G T C G T C A A T C G A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A